Index

_

_data_loader() (sarcgraph.sg.SarcGraph method) _detect_contours() (sarcgraph.sg.SarcGraph method) _filter_frames() (sarcgraph.sg.SarcGraph method) _merge_tracked_zdiscs() (sarcgraph.sg.SarcGraph method) _process_contour() (sarcgraph.sg.SarcGraph method) _process_input() (sarcgraph.sg.SarcGraph method)

_prune_graph() (sarcgraph.sg.SarcGraph method) _save_dataframe() (sarcgraph.sg.SarcGraph method) _save_numpy() (sarcgraph.sg.SarcGraph method) _score_graph() (sarcgraph.sg.SarcGraph method) _to_gray() (sarcgraph.sg.SarcGraph method) _zdisc_to_graph() (sarcgraph.sg.SarcGraph method) _zdiscs_to_pandas() (sarcgraph.sg.SarcGraph method)

C

compute_F_J() (sarcgraph.sg_tools.SarcGraphTools.Analysis method) compute_metrics() (sarcgraph.sg_tools.SarcGraphTools.Analysis method) compute_OOP() (sarcgraph.sg_tools.SarcGraphTools.Analysis method)

compute_ts_params() (sarcgraph.sg_tools.SarcGraphTools.Analysis method) contraction() (sarcgraph.sg_tools.SarcGraphTools.Visualization method) create_spatial_graph() (sarcgraph.sg_tools.SarcGraphTools.Analysis method)

D

dendrogram() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)

F

F() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)

F_eigenval_animation() (sarcgraph.sg_tools.SarcGraphTools.Visualization method) file_type (sarcgraph.sg.SarcGraph attribute)

J

J() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)

M

module sarcgraph

N

normalized_sarcs_length() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)

O

OOP() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)

output_dir (sarcgraph.sg.SarcGraph attribute)

S

sarcgraph module SarcGraph (class in sarcgraph.sg) SarcGraphTools (class in sarcgraph.sg_tools) SarcGraphTools.Analysis (class in sarcgraph.sg_tools)

SarcGraphTools.TimeSeries (class in sarcgraph.sg_tools) SarcGraphTools.Visualization (class in sarcgraph.sg_tools) sarcomere_detection() (sarcgraph.sg.SarcGraph method) sarcomeres_gpr() (sarcgraph.sg_tools.SarcGraphTools.TimeSeries method) spatial_graph() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)

T

timeseries_params() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)

tracked_vs_untracked() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)

Z

zdisc_segmentation() (sarcgraph.sg.SarcGraph method)

zdisc_tracking() (sarcgraph.sg.SarcGraph method) zdiscs_and_sarcs() (sarcgraph.sg_tools.SarcGraphTools.Visualization method)