sarcgraph.sg.SarcGraph
- class sarcgraph.sg.SarcGraph(output_dir='test-run', file_type='video')[source]
Zdiscs and sarcomeres segmentation and tracking.
- output_dir
location to save processed information, by default
'test-run'- Type:
str, optional
- file_type
use
'image'for single-frame samples and'video'for multi-frame samples, by default'video'- Type:
str, optional
Methods
zdisc_segmentation([file_path, raw_frames, ...])Finds Z-Discs in a video/image and extracts related information, (frame number, center position, end points).
zdisc_tracking([file_path, raw_frames, ...])Track detected Z-Discs in a video.
sarcomere_detection([file_path, raw_frames, ...])Detect sarcomeres in a video/image.