sarcgraph.sg_tools.SarcGraphTools

class sarcgraph.sg_tools.SarcGraphTools(input_dir='test-run', quality=300, include_eps=False, save_results=True)[source]

Tools for post processing analysis on detected sarcomeres.

Parameters:

  • input_dir (str) –

    Should be the same as the output_dir in sarcgraph.sg.Sarcgraph(),

    by default “test-run”

  • quality (int) – dpi of saved figures in png format, by default 300

  • include_eps (bool) – save eps format of figures, by default False

  • save_results (bool) – save the results of post processing analysis, by default True

Classes

TimeSeries(sg_tools)

Provides the tools to apply Gaussian Process Regression (GPR) on timeseries of detected sarcomere

Visualization(sg_tools)

Provides tools to visualize the results of post-processing analysis on detected sarcomeres.

Analysis(sg_tools)

Provides tools for post processing analysis of detected sarcomeres.